Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics | Nature Communications
Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids | Nature Communications
DIA mass spectrometry | Nature Methods
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics | Nature Communications
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics | Nature Methods
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling | Journal of Proteome Research
Strategies to enable large-scale proteomics for reproducible research | Nature Communications
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas | Scientific Data
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
Increasing the throughput of sensitive proteomics by plexDIA | Nature Biotechnology
New Nature Communications publication by Mann & Theis Groups harnesses the benefits of large-scale peptide
DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput | Nature Methods
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS | Scientific Data
Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries | Nature Communications
Frontiers | Recent Developments in Data Independent Acquisition (DIA) Mass Spectrometry: Application of Quantitative Analysis of the Brain Proteome
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics | Nature Communications
Multiplexed peptide analysis using data-independent acquisition and Skyline | Nature Protocols
Quantitative shotgun proteome analysis by direct infusion | Nature Methods
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics | Nature Communications
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology | Nature Communications
Mass-spectrometric exploration of proteome structure and function | Nature
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods
